PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G244200.1
Common NameB456_005G244200, LOC105795311
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 264aa    MW: 29370.1 Da    PI: 9.017
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G244200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.61.1e-08196243455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er R ++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gorai.005G244200.1 196 SHSLAERVRKEKISERLKYLQNLVPRC----NKITGKAGMLDEIINYVQSLQ 243
                         8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-16190261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.50E-8190247No hitNo description
Gene3DG3DSA:4.10.280.108.9E-17192259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.424192242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-6196243IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-6198248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MNRALPEILQ RSDMTVKEQT YFNELSGVIS TQSTHVNSFH GGLMSDDSVL TREGKEPSWS  60
EFGKLEKATL GFQPCEYGNE PSFNIDYAIS RTSSRQPPVL AAVAASEAAE NMGSSVGRES  120
YKKRKADKLQ NSKAVVEDGS TKKIKACEEE EKESKITGPP STTIKSNSYK ANSKVSEVQK  180
PDYIHVRARR GQATDSHSLA ERVRKEKISE RLKYLQNLVP RCNKITGKAG MLDEIINYVQ  240
SLQRQVEFLS MEIAAVNPRL DFN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5277171e-121HQ527717.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AQJSU simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480332.10.0PREDICTED: transcription factor bHLH63 isoform X1
RefseqXP_012480333.10.0PREDICTED: transcription factor bHLH63 isoform X1
SwissprotQ8GY614e-49BH063_ARATH; Transcription factor bHLH63
SwissprotQ9SRT25e-49BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A0D2RL360.0A0A0D2RL36_G
STRINGVIT_03s0038g04760.t018e-72(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59472543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.14e-48cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]